華中農業大學

1.        Fu X, Ding Z, Fan J, Wang H, Zhou F, Cui L, Chen B, Wang W, Liu H*. Characterization, promoter analysis and expression of the interleukin-6 gene in blunt snout bream, Megalobrama amblycephala. Fish Physiol Biochemistry,accepted

2.        Ding Z, Zhao X, Su L, Zhou F, Chen N, Wu J, Wu F, Wang W and Liu H*. The Megalobrama amblycephala transferrin and transferrin receptor genes: molecular cloning, characterization and expression during early development and after Aeromonas hydrophila infection. Dev Comp Immunol. 2015, 49(2): 290-297

3.        Li H, Li C, Tang X, Liao F, Wang C, Liang Z, Liu H* and Yuan X. Complete mitochondrial genome of Bangana decorus (Cypriniformes, Cyprinidae). Mitochondrial DNA, doi:10.3109/19401736.2014.982600

4.        Hu H, Yu D, Liu H*. Bioinformatics analysis of small RNAs in Pima (Gossypium barbadense L.). PLoS ONE 2015, 10(2): e0116826

5.        Chen N, Wan X, Huang C, Wang W, Liu H, Wang H*. Study on the immune response to recombinant Hsp70 protein from Megalobrama amblycephala. 2014, Immunobiology 219: 850-858

6.        Luo W, Zhang J, Wen J, Liu, H, Wang W, Gao Z*. Molecular cloning and expression analysis of major histocompatibility complex class I, IIA and IIB genes of blunt snout bream (Megalobrama amblycephala). Dev Comp Immunol. 2014, 42(2):169-173.

7.        Ding Z, Wu J, Su L, Zhou F, Zhao X, Deng W, Zhang J, Liu S, Wang W, Liu H*. Expression of heat shock protein 90 genes during early development and infection in Megalobrama amblycephala and evidence for adaptive evolution in teleost. Dev Com Immunol. 2013, 41(4):683-693. Corresponding author

8.        Jiang Y, Gao X, Liu S, Zhang Y, Liu H, Sun F, Bao L, Waldbieser G and Liu Z*. Whole genome comparative analysis of channel catfish (Ictalurus punctatus) with four model fish species. BMC genomics, 2013, 14:780

9.        Liu S, Wang X, Sun F, Zhang J, Feng J, Liu H, Rajendran KV, Sun L, Zhang Y, Jiang Y, Peatman E, Kaltenboeck L, Kucuktas H, and Liu Z*. RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish. Physiol. Genomics, 2013, 45:462-476

10.    Zhang J, Liu S, Rajendran KV, Sun L, Zhang Y, Sun F, Kucuktas H, Liu H, Liu Z*. Pathogen recognition receptors in channel catfish: III Phylogeny and expression analysis of Toll-like receptors. Dev Comp Immunol. 2013, 40(2):185-194

11.    Preziosa E, Liu S, Terova G, Gao X, Liu H, Kucuktas H, Terhune J, and Liu ZJ*. Effect of Nutrient Restriction and Re-feeding on Calpain Family Genes in Skeletal Muscle of Channel Catfish (Ictalurus punctatus). PLoS ONE 2013, 8(3): e59404

12.    Gao Z, Luo W, Liu H, Zeng C, Liu X, Yi S and Wang W*. Transcriptome analysis and SSR/SNP markers information of the blunt snout bream (Megalobrama amblycephala). PLoS ONE  2012, 7(8): e42637

13.    Ninwichian P, Peatman E, Liu H, Kucuktas H, Somridhivej B, Liu S, Li P, Jiang Y, Sha Z, Kaltenboeck L, Abernathy JW, Wang W, Chen F, Lee Y, Wong L, Wang S, Lu J, Liu Z*. Second-Generation Genetic Linkage Map of Catfish and Its Integration with the BAC-Based Physical Map. G3 (Bethesda) 2012, 2(10):1233-1241

14.    Zhou Z, Liu H, Liu S, Sun F, Peatman E, Kucuktas H, Kaltenboeck L, Feng T, Zhang H, Niu D, Lu J, Waldbieser G, Liu Z*. Alternative complement pathway of channel catfish (Ictalurus punctatus): molecular characterization, mapping and expression analysis of factors Bf/C2 and Df. Fish Shellfish Immunol. 2012, 32(1)：186-195. Co-first author

15.    Sha Z*, Liu H, Wang Q, Liu Y, Li M, Chen S*. Channel catfish (Ictalurus punctatus) protein disulphide isomerase, PDIA6: Molecular characterization and expression regulated by bacteria and virus inoculation. Fish Shellfish Immunol. 2012, 33: 220-228

16.    Zhang H, Peatman E, Liu H, Feng T, Chen L, Liu Z*. Molecular characterization of three L-type lectin genes from channel catfish, Ictalurus punctatus and their response to Edwardsiella ictaluri challenge. Fish Shellfish Immunol. 2012, 32(4): 598-608

17.    Rajendran KV, Zhang J, Liu S, Kucuktas H, Wang X, Liu H, Sha Z, Terhune J, Peatman E, Liu Z*. Pathogen recognition receptors in channel catfish: I. Identification, phylogeny 3 and expression of NOD-like receptors. Dev Comp Immunol. 2012, 37: 381-389

18.    Rajendran KV, Zhang J, Liu S, Kucuktas H, Wang X, Liu H, Wood T, Terhune J, Peatman E, Liu ZJ*. Pathogen recognition receptors in channel catfish: II. Identification, phylogeny and expression of retinoic acid-inducible gene I (RIG-I)-like receptors (RLRs), Dev Comp Immunol. 2012, 37:381-389

19.    Zhang H, Peatman E, Liu H, Niu D, Feng T, Kucuktas H, Waldbieser J, Chen L and Liu Z*. Characterization of a mannose-binding lectin from channel catfish (Ictalurus punctatus). Res Vet Sci. 2012, 92(3): 408-413

20.    Liu H, Peatman E, Wang W, Abernathy J, Liu S, Kucuktas H, Terhune J, Xu DH, Klesius P and Liu Z*. Molecular responses of ceruloplasmin to Edwardsiella ictaluri and iron overload in channel catfish (Ictalurus punctatus). Fish Shellfish Immunol. 2011, 30(3): 992-997.

21.    Liu H, Peatman E, Wang W, Abernathy J, Liu S, Kucuktas H, Lu J, Xu DH, Klesius P, Waldbieser J and Liu Z*. Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus). Dev Comp Immunol. 2011, 35(3): 267-272.

22.    Niu D, Peatman E, Liu H, Lu J, Kucuktas H, Liu S, Sun F, Zhang H, Feng T, Zhou Z, Terhune J, Waldbieser J and Liu Z*. Microfibrillar-associated protein 4 (MFAP4) genes in catfish play a novel role in innate immune responses. Dev Comp Immunol. 2011, 35(5): 568-579.

23.    Liu S, Zhou Z, Lu J, Sun F, Wang S, Liu H, Jiang Y, Kucuktas H, Kaltenboeck L, Peatman E, Liu Z*. Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP . BMC genomics 2011, 12: 53.

24.    Feng T, Zhang H, Liu H, Zhou Z, Niu D, Wong L, Kucuktas H, Liu X, Peatman E, Liu Z*. Molecular characterization and expression analysis of the channel catfish cathepsin D genes. Fish Shellfish Immunol. 2011, 31:164-169.

25.    Liu H, Takano T, Abernathy J, Wang S, Sha Z, Jiang Y, Kucuktas H and Liu Z*. Structure and Expression of Transferrin Gene of Channel Catfish, Ictaiurus punctatus. Fish Shellfish Immunol. 2010,28: 159-166.

26.    Liu H, Takano T, Peatman E, Abernathy J, Wang S, Sha Z, Kucuktas H, Xu D, Klesius P, Liu Z*. Molecular characterization and gene expression of the channel catfish ferritin H subunit after bacterial infection and iron treatment. J Exp Zool. 2010, 311A: 359-368.

27.    Wang S, Peatman E, Liu H, Bushek D, Ford SE, Kucuktas H, Quilang J, Li P, Wallace R, Wang Y, Guo X, Liu Z*. Micro analysis of gene expression in eastern Oyster (Crassostrea virginica) reveals oxidative stress and apoptosis host responses after dermo (Perkinsus marinus) challenge. Fish Shellfish Immunol. 2010, 29: 921-929.

28.    Chen F, Lee Y, Jiang Y, Wang S, Peatman E, Abernathy J, Liu H, Liu S, Kucuktas H, Ke C, Liu Z*. Identification and Characterization of Full-Length cDNAs in Channel Catfish (Ictalurus punctatus) and Blue Catfish (Ictalurus furcatus). PLoS ONE 2010, 5(7): e11546.

29.    Jiang Y, Abernathy J, Peatman E, Liu H, Wang S, Xu D, Kucuktas H, Klesius P, Liu Z*. Identification and characterization of matrix metalloproteinase-13 sequence structure and expression during embryogenesis and infection in channel catfish (Ictalurus punctatus). Dev Comp Immunol. 2010, 34(5): 590-597.

30.    Wang S, Peatman E, Abernathy J, Waldbieser G, Lindquist E, Richardson P, Lucas S, Wang M, Li P, Thimmapuram J, Liu L, Vullaganti D, Kucuktas H, Murdock C, Small BC, Wilson M, Liu H, Jiang Y, Lee Y, Chen F, Lu J, Wang W, Xu P, Somridhivej B, Baoprasertkul P, Quilang J, Sha Z, Bao B, Wang Y, Wang Q, Takano T, Nandi S, Liu S, Wong L, Kaltenboeck L, Quiniou S, Bengten E, Miller N, Trant J, Rokhsar D, Liu Z*. the Catfish Genome Consortium. Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies. Genome Biol. 2010, 11(1): R8.

31.    Liu H, Jiang Y, Wang S, Ninwichian P, Somridhivej B, Xu P, Abernathy J, Kucuktas H and Liu Z*. Comparative analysis of catfish BAC end sequences with the zebrafish genome. BMC genomics 2009, 10: 592.

32.    Abernathy JW, Lu J, Liu H, Kucuktas H, Liu Z*. Molecular characterization of complement factor I reveals constitutive expression in channel catfish. Fish Shellfish Immunol. 2009, 27(3): 529-534.

33.    Sha Z, Abernathy JW, Wang S, Li P, Kucuktas H, Liu H, Peatman E, Liu Z*. NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish. Dev Comp Immunol. 2009, 33(9): 991-999.

34.    Kucuktas H, Wang S, Li, P, He C, Xu P, Sha Z, Liu H, Jiang Y, Baoprasertkul P, Somridhivej B, Wang Y, Abernathy J, Guo X, Liu, Muir W and Liu Z*. Construction of Genetic Linkage Maps and Comparative Genome Analysis of Catfish Using Gene-Associated Markers. Genetics 2009, 181: 1-12.

35.    Wang S, Sha, Z, Sonstegard TS, Liu H, Xu P, Somridhivej B, Peatman E, Kucuktas H and Liu Z*. Quality assessment parameters for EST-derived SNPs from catfish. BMC Genomics 2008, 9: 450 .

36.    Sha Z, Xu P, Takano T, Liu H, Terhune J and Liu Z*. The warm temperature acclimation protein Wap65 as an immune response gene: Its duplicates are differentially regulated by temperature and bacterial infections. Mol Immunol. 2008, 45: 1458-1469.

37.    Somridhivej B, Wang S, Sha Z, Liu H, Quilang J, Xu P, Li P, Hu Z and Liu Z*. Characterization, polymorphism assessment, and database construction for microsatellites from BAC end sequences of channel catfish (Ictalurus punctatus): A resource for integration of linkage and physical maps. Aquaculture 2008, 275: 76-80.

38.    Takano T, Sha Z, Peatman E, Terhune J, Liu H, Kucuktas H, Li P, Edholm E, Wilsonc M and Liu Z*. The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri. Dev Comp Immunol. 2008, 32: 693-705.

39.    楊永波，扶曉琴，陳柏湘，王衛民，劉紅*。嗜水氣單胞菌感染對團頭魴肝臟鐵代謝影響的初步研究。華中農業大學學報，2015,34（4）：1-5.

40.    蘇利娜，丁祝進，李鴻，周鳳娟，王衛民，劉紅*。團頭魴Dmrt4基因的克隆與表達分析。華中農業大學學報，2013，32（6）：13-19.

41.    呼光富，劉紅*，馬徐發。武漢南湖原生動物的初步研究。水利漁業， 2007，27(3): 77-78 .

42.    劉紅，馬徐發，熊幫喜。武漢南湖的浮游植物。淡水漁業，2006，36（1）：32-35.

43.    劉紅，馬徐發，劉瑾。武漢南湖浮游輪蟲的初步研究。水利漁業，2006，26（2）：60-62 .

44.    劉紅。HPLC 研究圍隔實驗中水柱顆粒物色素的動態變化。海洋與湖沼通報, 2006，108（2）：75-81 .

45.    黃彥，劉紅*。福爾馬林和高錳酸鉀對柱形寬水蚤的滅活效果。水利漁業，2005，25：25-26.

46.    劉紅，馬徐發，熊邦喜。武漢南湖的浮游甲殼動物。淡水漁業，2005，35：22-24.

47.    劉紅，劉學軍。HPLC方法研究鰱鳙腸含物葉綠素及其代謝產物。華中農業大學學報（Sup），2005，36：43-46.

48.      Chen F, Xie P, Tang H and Liu H. Evidence for negative effects of Microcystis blooms on the crustacean plankton in an enclosure experiment in the subtropical China.J Envir Sci. 2005, 17(5): 775-781.

49.    Tang H, Xie P and Liu H. Changes in the phytoplankton community of Lake Donghu since the 1980s. J Freshw Ecol, 2005, 20(3): 591-594.

50.    劉紅，謝平，周潔，劉學軍，唐匯娟。武漢東湖光合色素與葉綠素a代謝產物的HPLC研究. 水生生物學報，2003，27（1）：1-6 .

51.    Xie L, Xie P, Li S, Tang H and Liu H. The low TN: TP ratio, a cause or a result of Microcystis blooms?Water Res 2003, 37: 2073-2080.

52.    Liu H, Xie P, Chen F, Tang H. and Xie L. Enhancement of planktonic rotifers by Microcystis aeruginosa blooms: an enclosure experiment in a shallow eutrophic lake.J  Freshw Ecol. 2002, 17(2): 239-247.

53.    劉紅，曹志華。太湖新銀魚和近太湖新銀魚脂肪酸組成分析。湖北農學院學報，1999，19（1）：50-522.

1.         劉紅主編。《水產養殖技術》。2013，北京：中央廣播電視大學出版社。ISBN 978-7-304-06409-9。

2.         劉紅。第五章遺傳信息的改變。見李家樂主編《水產動物遺傳學》。北京：2014

3.         Wang S, Liu H and Liu Z. SNP quality assessment. In: Next generation sequencing and whole genome selection in aquaculture. 2011 Ed:  Liu ZJ. Blackwell publishing Ltd. ISBN-13: 978-0-9138-0637-2.

4.         王少林和劉紅。比較基因組學在水產生物基因組學研究中的應用。見《水產基因組技術與研究進展》。2011，北京：海洋出版社ISBN 978-7-5027-8027-2。

5.         劉紅。水生無脊椎動物。見張桂蓉主編中央廣播農業學校教材《養殖水環境》。2004，北京：中國農業出版社。ISBN 7-109-08882-0 。